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FULL PEER-REVIEWED JOURNAL PAPERS
(names with * are students or postdocs
in the lab)
(64)
Chang, Y. J., C.L. Sun, Y. Chen, S.
Z. Yeh. 2008. Incorporating
uncertainty into the estimation of
biological reference points for a
spiny lobster (Panulirus
penicillatus) fishery. New
Zealand Journal of Freshwater and
Marine Research (in press)
(63)
Chen, Y., Y. Jiao, C. L. Sun, and X.
Chen. 2008. Calibrating virtual
population analysis for fisheries
stock assessment. Aquatic Living
Resources DOI: 10.1051/alr
(62)
Chen, X., Y. Chen, S. Tian, B. Liu,
and W. Qian. 2008. An assessment of
the west winter-spring cohort of
neon flying squid (Ommastrephes
bartramii) in the Northwest Pacific
Ocean. Fisheries Research (in
press).
(61)
Wahle, R. A., C. *Bergeron, A.
Chute, L. Jacobson and Y. Chen.
2008. The New England Deep Sea Red
Crab Population Before and After the
Onset of Harvesting. ICES Journal
of Marine Sciences 65
doi:10.1093/icesjms/fsn058
(60)
Chen, Y., C. L. Sun, and *M. Kanaiwa.
2008. Impacts of prior mis-specification
on Bayesian fisheries stock
assessment. Freshwater and Marine
Research 59:145-156.
(59)
Su, NJ, SZ Yeh, C.L. Sun, A. E.
Punt, Y. Chen, S.P. Wang. 2008.
Standardizeing catch and effort data
of the Taiwanese distant-water
longline fishery in the western and
central Pacific Ocean for bigeye
tuna, Thunnus obesus. Fisheries
Research 90:235-246.
(58)
*Kanaiwa, M., Y. Chen, and C.
Wilson. 2008. Evaluating a seasonal,
sex-specific size-structured stock
assessment model for the American
lobster, Homarus americanus.
Freshwater and Marine Research
59:41-56.
(57)
Chen, X J., Liu, B L., Chen, Y.
2008. A review of the development of
Chinese distant-water squid jigging
fisheries. Fisheries Research
89:211-221
(56)
Chen, Y., X. Chen, and L. Xu. 2008.
Developing a size indicator for fish
populations. Scientia Marina 72:
221-229.
(55)
Incze, L. S., H. Xue, N. Wolff, D.
Xu, R. Wahle, C. Wilson, R. Steneck,
E. Annis, P. Lawton and Y. Chen.
2007. Early Life History and a
Modeling Framework for Lobster
Populations in the Gulf of Maine.
Journal of Crustacean Biology
26:555-564.
(54)
Chen, X, X. Zhao, and Y. Chen. 2007.
El Niño/La Niña Influence on the
Western Winter- Spring Cohort of
Neon Flying Squid (Ommastrephes
bartarmii) in the Northwestern
Pacific Ocean. ICES Journal of
Marine Sciences 64:1152-1160.
(53)*Zhang,
Y. and Y. Chen. 2007. Modeling and
evaluating ecosystem in 1980s and
1990s for American lobster (Homarus
americanus) in the Gulf of Maine.
Ecological Modeling 203:475-489.
(52)
*Liu, Q., Y. Chen, J. Li and L.
Chen. 2007. The food web structure
and ecosystem properties of a
filter-feeding carps dominated deep
reservoir ecosystem. Ecological
Modeling 203:279-289.
(51)
Chen, Y., L. Xu, X. Chen , and X.
Dai. 2007. A simulation study of
impacts of at-sea discarding and
bycatch on the estimation of
biological reference points F0.1 and
Fmax. Fisheries Research
85:14-22.
(50)Chang,
J., C. L. Sun, Y. Chen, S. Yeh, W.
Chiang, and W. Su. 2007.
Reproductive biology of the spiny
lobster, Panulirus Penicillatus, in
the southeastern coastal waters off
Taiwan. Marine Biology
151:553-564.
(49) * Rajakauna, H.,
Y. Chen,
and P. Snelgrove. 2006. Is retrospective error a “true
error”? mathematical basis of
adaptive framework for virtual
population analysis. Mathematical
and Physical Fisheries Science
(in press).
(48)
Chen, Y.,
S. Sherman, C. Wilson, J. Sowles,
and *M. Kanaiwa. 2006. A comparison
of two fishery-independent survey
programs in characterizing
population structure of American
lobster, Humarus americanus,
in the Gulf of Maine. Fishery
Bulletin 104:247-255.
(47)
*Kirshenbaum, S.,
Feindal, S., and Y. Chen. 2006. A
study to evaluate methods of tagging Maine sea
cucumber (Cucumaria frondosa).
Fishery Bulletin 104:299–302
(46)
*Kanaiwa, M.,
Y. Chen, and M. Hunter. 2005. An
evaluation of a complex length-based
fisheries stock assessment model for
the green sea urchin fishery in
Maine, USA. Fisheries Research
74:96-115.
(45) Chen, Y.,
*M. Kanaiwa, and C. Wilson. 2005.
Developing a Bayesian stock
assessment framework for the
American lobster fishery in the Gulf
of Maine. (Special issue on Lobster Biology
and Management) 39:645-660.
(44)
*Grabowski, R., *T. Windholz, and Y.
Chen. 2005. Estimating exploitable
stock biomass for the Maine green
sea urchin (Strongylocentrotus
droebachiensis) fishery using a
spatial statistics approach. Fishery
Bulletin 103:320-330
(43) *Jiao,
Y., Y. Chen, and J. Wroblewski.
2005. An application of composite
risk assessment method in assessing
fisheries stock status. Fisheries
Research 72:173-183
(42)
* Jiao, Y. and Y. Chen. 2004. An
application of generalized linear
model in production model and
sequential population analysis.
Fisheries Research 70:367-376.
(41)
*Grabowski, R. and Y. Chen. 2004.
Incorporating uncertainty into the
development of biological reference
points F0.1 and Fmax for the Maine
green sea urchin (Strongylocentrotus
droebachiensis) fishery.
Fisheries Research 68:367-371.
(40)
*Scheirer, K., Y. Chen, and C.
Wilson. 2004.
Comparing two sampling programs for
the Maine lobster fishery. Fisheries
Research
68: 343 – 350.
(39)
*Jiao, Y., Y. Chen, D. Schneider and
J. Wroblewski. 2004. A simulation
study of impacts of error structure
on modelling stock –recruitment data
using generalised linear models.
Canadian Journal of Fisheries and
Aquatic Sciences 61:122-133.
(38)
*Jiao, Y., D. Schneider, Y. Chen,
and J. Wroblewski. 2004. An analysis
of error structure in modeling
stock-recruitment data of Gadus
stocks using generalised linear
models.Canadian Journal of Fisheries
and Aquatic Sciences 61:134-146
(37)
Jackson, D. A. and Y. Chen. 2003.
Robust principal component analysis
of ecological data. Environmetrics
14:1-11.
(36)
Chen, Y., M. Hunter, R. Vadas, B.
Beal. 2003. Developing a growth
transition matrix for the Maine sea
urchin stock. Fishery Bulletin
101:737-744.
(35) Chen, Y.
and Y. Ye. 2003. Evaluation of
changes in Kuwait fishery after the
1991 Gulf war. Aquatic Sciences
65:167-180.
(34) Chen, Y.
, *Y. Jiao, and L. Chen. 2003. A
general approach to developing
robust frequentist and Bayesian
stock assessment methods in
fisheries. Fish and Fisheries
4:105-120.
(33) Chen, Y.,
L. Chen, and K. Stergiou. 2003.
Quantity of fisheries data and
uncertainty in stock assessment
Aquatic Sciences 65:92-98.
(32) Chen, Y. and M. Hunter. 2003.
Assessing the green sea urchin (Strongylocentrotus
drobachiensis) stock in Maine,
USA. Fisheries Research 60:527-537.
(31) Chen, Y.
2003. Quality of fisheries data and
uncertainty in stock assessment.
Scientia Marina 67 (Suppl. 1) 75-87.
(30) *Zhao, Y., Y. Chen, and J. A.
Brown. 2002. Impacts of egg size and
hatching temperature on size,
survival and growth of Atlantic cod
larvae (Gadus morhua).
Proceeding of the 3rd
World Fisheries Congress,
American Fisheries Society,
Bethesda, MD (peer-reviewed)
(29) Chen, Y. and
*H.
Rajakaruna. 2002. Impacts of
quantity and quality of fisheries
data on stock assessment.
Proceedings of the 3rd
World Fisheries Congress, American
Fisheries Society, Bethesda, MD
(peer-reviewed).
(28) Chen, Y.
and C. Wilson. 2002. A simulation
study to evaluate impacts of
uncertainty on the assessment of
American lobster fishery in the Gulf
of Maine. Canadian Journal of
Fisheries and Aquatic Sciences 59:
1394-1403.
(27) Chen, Y.
and . 2001. An
application of robust Bayesian
methods in fisheries stock
assessment. Proceedings of the
Annual Meeting of the American
Statistical Society, Atlanta,
George, August 5-9, 2001.
(26)
*Zhao, Y., Y. Chen, and J.
Brown. 2001. Egg size, hatching
temperature effects on size of
Atlantic cod (Gadus morhua)
larvae. Journal of Fish Biology
59:569-581.
(25) Chen, Y.,
P. Breen, and N. Andrew. 2000.
Impacts of outliers and mis-specification
of priors on Bayesian fisheries
stock assessment. Canadian
Journal of Fisheries and Aquatic
Sciences 57: 2293-2305
(24) Chen, Y. and D. A. Jackson.
2000.
An empirical study
on estimators for linear regression
analyses in fisheries and ecology.
Fisheries Research 49:193-206PRIVATE
(23) Chen, Y.
and H. H. Harvey. 1999. Spatial
structuring of length-at-age of the
benthivorous white sucker (Catostomus
commersoni) in relation to
environmental variables. Aquatic
Living Resources 12:351-362.
(22) Chen, Y.
and D. Fournier. 1999. Impacts of
atypical data on Bayesian inference
and robust Bayesian approach in
fisheries. Canadian Journal of
Fisheries and Aquatic Sciences
56:1525-1533
(21) Chen, Y.
and *G. S. Mello. 1999. Growth and
maturation of cod (Gadus morhua)
of different year classes in NAFO
Subdivision 3Ps in Northwest
Atlantic. Fisheries Research
42:87-101
(20) Chen, Y.
and S. Kennelly. 1999. Growth of
spanner crab, Ranina ranina,
off the east coast of Australia.
Freshwater and Marine Research
50:319-325
(19) Chen, Y.
and S. Montgomery. 1999. Modelling
the dynamics of rock lobster,
Jasus verreauxi, stock in New
South Wales, Australia. Fishery
Bulletin 97:25-38.
(18) Chen, Y.
and J. E. Paloheimo. 1998. Can a
more realistic model error structure
improve parameter estimation in
modelling the dynamics of fish
populations? Fisheries Research
38:9-17.
(17) Chen, Y.,
G. Liggins, and R. West. 1998. A
yield-per-recruit model for
sequential fisheries and its
application in evaluating the
management strategy of changing
incidental inshore fishing
mortality. Aquatic Sciences
60:130-144.
(16) Chen, Y.
and N. Andrew. 1998. Parameter
estimation in modelling the dynamics
of fish stock biomass: are currently
used observation-error estimators
reliable? Canadian Journal of
Fisheries and Aquatic Sciences
55:749-760.
(15) Chen, Y. 1997. A comparison
study of age- and length-structured
yield-per-recruit models.
Fisheries
Research
30:43-55.
(14)
Andrew, N. and Y. Chen. 1997.
Optimal sampling for estimating the
size structure and mean size of
abalone caught in a New South Wales
fishery. Fishery Bulletin
95:403-413.
(13) Chen, Y.
and G. Gordon. 1997. Assessing
at-sea discarding using a
length-structured yield-per-recruit
model. Fisheries Research 30:43-55.
(12) Chen, Y.,
G. Liggins, K. Graham, and S.
Kenelley. 1997. Modelling
length-dependent offshore
distribution of redfish,
Centroberyx affinis. Fisheries
Research 29:39-54.
(11)
Paloheimo, J. E. and Y. Chen.
1996. Estimating fish mortalities
and cohort sizes. Canadian
Journal of Fisheries and Aquatic
Sciences 53:1572-1579.
(10) Chen, Y.
1996. A Monte Carlo study on impacts
of the size of subsample catch on
estimation of fish stock parameters.
Fisheries Research 26:207-223.
(9) Chen, Y.
and D. A. Jackson. 1995. Robust
estimation of mean and variance in
fisheries. Transactions of the
American Fisheries Society
124:401-412.
(8) Chen, Y.
and H. H. Harvey. 1995. Growth,
abundance, and food supply of white
sucker, Catostomus commersoni.
Transactions of the American
Fisheries Society 124:262-271.
(7) Chen, Y.
and J. E. Paloheimo. 1995. A robust
regression analysis of recruitment
in fisheries. Canadian Journal of
Fisheries and Aquatic Sciences
52: 993-1006.
(6) Chen, Y.
and H. H. Harvey. 1994. Maturation
of white sucker, Catostomus
commersoni, populations in
Ontario. Canadian Journal of
Fisheries and Aquatic Sciences
51:2066-2076.
(5) Chen, Y.
and J. E. Paloheimo. 1994.
Estimation of fish length and age at
50% maturity using a logistic type
model. Aquatic Sciences
56:206-219.
(4) Chen, Y.
and J. E. Paloheimo. 1994. Robust
regression approach to estimating
fish mortality rates with a
cohort-based model. Transactions
of the American Fisheries Society
50:2421-2428.
(3) Chen, Y.,
D. A. Jackson, and J. E. Paloheimo.
1994. Robust regression approach to
analyzing fisheries data.
Canadian Journal of Fisheries and
Aquatic Sciences 51:1420-1429.
(2)
Paloheimo, J. E. and Y. Chen.
1993. Estimation of effective effort
from catch-at-age data. Canadian
Journal of Fisheries and Aquatic
Sciences 50:2421-2428.
(1) Chen, Y.,
D. A. Jackson, H. H. Harvey. 1992. A
comparison of von Bertalanffy and
polynomial functions in modelling
fish growth data. Canadian
Journal of Fisheries and Aquatic
Sciences 49:1228-1235.
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